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Block graphs in practice

journal contribution
posted on 2024-11-02, 04:24 authored by Travis Gagie, Christopher Hoobin, Simon Puglisi
Motivated by the rapidly increasing size of genomic databases, code repositories and versioned texts, several compression schemes have been proposed that work well on highly-repetitive strings and also support fast random access: e.g., LZ-End, RLZ, GDC, augmented SLPs, and block graphs. Block graphs have good worst-case bounds but it has been an open question whether they are practical. We describe an implementation of block graphs that, for several standard datasets, provides better compression and faster random access than competing schemes.

History

Related Materials

  1. 1.
    DOI - Is published in 10.1007/s11786-016-0286-9
  2. 2.
    ISSN - Is published in 16618270

Journal

Mathematics in Computer Science

Volume

11

Issue

2

Start page

191

End page

196

Total pages

6

Publisher

Springer Basel AG

Place published

Switzerland

Language

English

Copyright

© 2017, Springer International Publishing.

Former Identifier

2006076938

Esploro creation date

2020-06-22

Fedora creation date

2017-12-04

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