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Colored noise induced bistable switch in the genetic toggle switch systems

journal contribution
posted on 2024-11-01, 22:05 authored by Pei Wang, Jinhu Lu, Xinghuo YuXinghuo Yu
Noise can induce various dynamical behaviors in nonlinear systems. White noise perturbed systems have been extensively investigated during the last decades. In gene networks, experimentally observed extrinsic noise is colored. As an attempt, we investigate the genetic toggle switch systems perturbed by colored extrinsic noise and with kinetic parameters. Compared with white noise perturbed systems, we show there also exists optimal colored noise strength to induce the best stochastic switch behaviors in the single toggle switch, and the best synchronized switching in the networked systems, which demonstrate that noise-induced optimal switch behaviors are widely in existence. Moreover, under a wide range of system parameter regions, we find there exist wider ranges of white and colored noises strengths to induce good switch and synchronization behaviors, respectively; therefore, white noise is beneficial for switch and colored noise is beneficial for population synchronization. Our observations are very robust to extrinsic stimulus strength, cell density, and diffusion rate. Finally, based on the Waddington's epigenetic landscape and the Wiener-Khintchine theorem, physical mechanisms underlying the observations are interpreted. Our investigations can provide guidelines for experimental design, and have potential clinical implications in gene therapy and synthetic biology.

History

Related Materials

  1. 1.
    DOI - Is published in 10.1109/TCBB.2014.2368982
  2. 2.
    ISSN - Is published in 15455963

Journal

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Volume

12

Issue

3

Start page

579

End page

589

Total pages

11

Publisher

A C M Special Interest Group

Place published

United States

Language

English

Copyright

© 2014 IEEE.

Former Identifier

2006055987

Esploro creation date

2020-06-22

Fedora creation date

2015-11-17

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