Distribution and genetic diversity of lactic acid bacteria from traditional fermented sausage

This study was conducted to investigate the distribution and genetic diversity of the native lactic acid bacteria (LAB) population in nem chua, a popular traditional Vietnamese uncooked fermented sausage. A total of 74 LAB isolates were identified and their molecular fingerprints were obtained using repetitive-PCR (rep-PCR) and pulse-field gel electrophoresis (PFGE). The results revealed that the majority of LAB isolates were Lactobacillus plantarum (67.6%), followed by Pediococcus pentosaceus (21.6%). A minority of LAB (9.5%) were Lactobacillus brevis and Lactobacillus farciminis (1.4%). A large genetic plasticity within the same species was also observed. Both rep-PCR and PFGE methods were found to be acceptable regarding reproducibility and reliability. However, this study demonstrated the higher discriminatory power of PFGE compared to rep-PCR, as observed by the higher number of clusters generated (17 and 12 clusters of L. plantarum respectively, seven and six clusters of P. pentosaceus respectively and four and two clusters of L. brevis respectively), and lower percentage of similarity among clusters in PFGE data analysis. These results also revealed that there was not a single LAB strain that was found to predominate in the product. To our knowledge, this is the first detailed analysis of the native LAB population in nem chua. As this traditional sausage is fermented naturally or only with back-slop, knowledge about the native LAB population in the product is very important to understand the microflora that has been active in fermenting the nem chua and to ensure the safety of this uncooked sausage.