This paper presents a formal framework for modeling and analysis of data and control flow dependencies between components or services within remotely deployed distributed systems. This work aims at elaborating for a concrete system, which parts of the system (or system model) are necessary to check a given property. The approach allows services and components decomposition oriented towards efficient checking of system properties as well as analysis of dependencies within a system: after analysis of the logical architecture of the system, an optimized architecture is developed following the specified algorithm. One of the key features of this approach is a semi-automatic support of the presented ideas on verification level.